Detecting differentially abundant subpopulations in mass cytometry dataUpdated 2 days ago

Aaron Lun

Rendered from cydar.Rmd in cydar 1.29.1.
Finding neighbors in high-dimensional spaceUpdated 3 days ago

Aaron Lun

Rendered from userguide.Rmd in BiocNeighbors 1.99.0.
Developing packages with beachmatUpdated 3 days ago

Aaron Lun

Rendered from linking.Rmd in beachmat 2.21.6.
Counting barcodes in sequencing screensUpdated 28 days ago

Aaron Lun

Rendered from counting.Rmd in screenCounter 1.5.1.
Assortment of header-only librariesUpdated 30 days ago

Aaron Lun

Rendered from userguide.Rmd in assorthead 0.99.5.
Freezing Python versions inside Bioconductor packagesUpdated 2 months ago

Aaron Lun

Rendered from motivation.Rmd in basilisk 1.17.2.
Saving SummarizedExperiments to artifacts and back againUpdated 2 months ago

Aaron Lun

Rendered from userguide.Rmd in alabaster.se 1.5.3.
Using the ResidualMatrix classUpdated 3 months ago

Aaron Lun

Rendered from ResidualMatrix.Rmd in ResidualMatrix 1.15.1.
Interacting with the gypsum REST APIUpdated 5 months ago

Aaron Lun

Rendered from userguide.Rmd in gypsum 1.1.6.
Saving objects to artifacts and back againUpdated 6 months ago

Aaron Lun

Rendered from userguide.Rmd in alabaster.base 1.5.6.
Utilities for multi-modal single-cell analysesUpdated 6 months ago

Aaron Lun

Rendered from overview.Rmd in mumosa 1.13.1.
Other single-cell RNA-seq analysis utilitiesUpdated 6 months ago

Aaron Lun

Rendered from misc.Rmd in scuttle 1.15.4.
Using SingleR to annotate single-cell RNA-seq dataUpdated 7 months ago

Aaron Lun, Jared M. Andrews, Friederike Dündar, Daniel Bunis

Rendered from SingleR.Rmd in SingleR 2.7.1.
Saving BumpyMatrices to fileUpdated 8 months ago

Aaron Lun

Rendered from userguide.Rmd in alabaster.bumpy 1.5.0.
Saving common bioinformatics file formatsUpdated 8 months ago

Aaron Lun

Rendered from userguide.Rmd in alabaster.files 1.3.0.
Save/load spatial omics data to/from fileUpdated 8 months ago

Aaron Lun

Rendered from userguide.Rmd in alabaster.spatial 1.5.1.
Saving XStringSets to artifacts and back againUpdated 9 months ago

Aaron Lun

Rendered from userguide.Rmd in alabaster.string 1.5.0.
Saving MultiAssayExperiments to artifacts and back againUpdated 9 months ago

Aaron Lun

Rendered from userguide.Rmd in alabaster.mae 1.5.0.
Saving SingleCellExperiments to artifacts and back againUpdated 9 months ago

Aaron Lun

Rendered from userguide.Rmd in alabaster.sce 1.5.1.
Saving arrays to artifacts and back againUpdated 10 months ago

Aaron Lun

Rendered from userguide.Rmd in alabaster.matrix 1.5.6.
Saving genomic ranges to artifacts and back againUpdated 10 months ago

Aaron Lun

Rendered from userguide.Rmd in alabaster.ranges 1.5.2.
Saving and reloading DelayedArray objectsUpdated 1 years ago

Aaron Lun

Rendered from userguide.Rmd in chihaya 1.5.0.
Using HDF5-backed matrices with beachmatUpdated 1 years ago

Aaron Lun

Rendered from userguide.Rmd in beachmat.hdf5 1.3.2.
Using the ScaledMatrix classUpdated 1 years ago

Aaron Lun

Rendered from ScaledMatrix.Rmd in ScaledMatrix 1.13.0.
Umbrella for the alabaster frameworkUpdated 2 years ago

Aaron Lun

Rendered from userguide.Rmd in alabaster 1.5.0.
Metadata schemas for Bioconductor objectsUpdated 2 years ago

Aaron Lun

Rendered from userguide.Rmd in alabaster.schemas 1.5.0.
Saving VCFs to artifacts and back againUpdated 2 years ago

Aaron Lun

Rendered from userguide.Rmd in alabaster.vcf 1.5.0.
Managing expiration of versioned subdirectoriesUpdated 2 years ago

Aaron Lun

Rendered from userguide.Rmd in dir.expiry 1.13.0.
Meta-analyses on p-values of various differential testsUpdated 3 years ago

Aaron Lun

Rendered from overview.Rmd in metapod 1.13.0.
Using scran to analyze single-cell RNA-seq dataUpdated 3 years ago

Aaron Lun

Rendered from scran.Rmd in scran 1.33.2.
DelayedArrays of random valuesUpdated 3 years ago

Aaron Lun

Rendered from userguide.Rmd in DelayedRandomArray 1.13.1.
Flexible clustering for BioconductorUpdated 3 years ago

Aaron Lun

Rendered from clusterRows.Rmd in bluster 1.15.1.
Assorted clustering diagnosticsUpdated 3 years ago

Aaron Lun

Rendered from diagnostics.Rmd in bluster 1.15.1.
Classes for genomic interaction dataUpdated 3 years ago

Aaron Lun

Rendered from interactions.Rmd in InteractionSet 1.33.0.
Correcting batch effects in single-cell RNA-seq dataUpdated 3 years ago

Aaron Lun

Rendered from correction.Rmd in batchelor 1.21.1.
Normalizing single-cell RNA-seq dataUpdated 4 years ago

Aaron Lun

Rendered from norm.Rmd in scuttle 1.15.4.
Quality control for single-cell RNA-seq dataUpdated 4 years ago

Aaron Lun

Rendered from qc.Rmd in scuttle 1.15.4.
Matrix representations to support decompositionUpdated 4 years ago

Aaron Lun

Rendered from representations.Rmd in BiocSingular 1.21.2.
Using BumpyMatrix objectsUpdated 4 years ago

Aaron Lun

Rendered from BumpyMatrix.Rmd in BumpyMatrix 1.13.0.
Utilities for basilisk installationUpdated 4 years ago

Aaron Lun

Rendered from purpose.Rmd in basilisk.utils 1.17.2.
Trajectory utilities for package developersUpdated 4 years ago

Aaron Lun

Rendered from overview.Rmd in TrajectoryUtils 1.13.0.
Introducing the csaw packageUpdated 4 years ago

Aaron Lun

Rendered from csaw.Rmd in csaw 1.39.0.
A DelayedArray backend for TileDBUpdated 4 years ago

Aaron Lun

Rendered from userguide.Rmd in TileDBArray 1.15.1.
Extending dispatch to more batch correction methodsUpdated 5 years ago

Aaron Lun

Rendered from extension.Rmd in batchelor 1.21.1.
Singular value decomposition for Bioconductor packagesUpdated 5 years ago

Aaron Lun

Rendered from decomposition.Rmd in BiocSingular 1.21.2.
diffHic VignetteUpdated 9 years ago

Aaron Lun

Rendered from diffHic.Rnw in diffHic 1.37.3.